Poll: do you think species-rich communities are those with stronger coexistence mechanisms?

One of the most important conceptual advances in community ecology over the last couple of decades has been the development of modern coexistence theory: a quantitative, rigorous theoretical framework that exhaustively defines, and quantifies the strength of, the classes of mechanisms by which species coexist (e.g., stabilizing vs. equalizing mechanisms). Chesson (2000) is the most accessible summary of this theoretical framework. Adler et al. (2007) is an even more accessible overview of some of the key ideas. Folks like Jon Levine, Peter Adler, Janneke Hille Ris Lambers, Steve Ellner, and their colleagues are now applying modern coexistence theory to real data, showing that it leads to practical real-world insights.

But most ecologists only care about coexistence mechanisms as a means to the end of understanding species diversity. And as various folks have noted (including me here on the blog), a theory of coexistence isn’t necessarily the same thing as a theory of species diversity. The question is, how are those two things related?

I’ve been thinking about that question, have chatted about it with various people, and have seen various people mention it in talks. I’ve been struck by the divergence of opinion as to what the answer is. But obviously, my anecdotal experience probably isn’t representative of the broad views of ecologists. Hence my little poll below: do you think more species-rich communities are those with stronger coexistence mechanisms? Choose the answer that best matches your views.

I may decide to do my ESA talk on this topic if the early poll responses are all over the map or if the modal answer is one I seriously disagree with. So please vote! 🙂

In the comments, I encourage you to explain your vote.

Favorite good (or bad?) examples of “operationalizing” vague ecological concepts?

“Operationalization” is the term for taking a concept that’s vague or abstract and making it more precise and concrete, so that it can be put to practical use. Like many scientific and social scientific fields that aren’t physics or chemistry, ecology has many concepts that are only vaguely defined, or at least were only vaguely defined when they were first proposed. “Niche” is an infamous example. Or think of how one response to my critique of the intermediate disturbance hypothesis was to question whether the ideas I was critiquing were “really” part of the intermediate disturbance hypothesis, properly defined. Few big ideas are born fully formed, so most new ideas have to go through some refinement and elaboration to make them operational

Sometimes, the process of operationalization is successful, meaning that eventually everyone agrees on the definition of the concept and can go out and apply it. For instance, everybody agrees what “gross primary productivity” is. There might be practical obstacles to measuring it in any particular case, and different ways of measuring it might be prone to different sorts of errors. But those are practical obstacles, not conceptual ones.

But sometimes, the process of operationalization fails.

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Here’s the draft introduction to my book about ecology. Please tear it apart. (UPDATED)

If you’re a very avid reader of this blog, you need to get a life will know that I’m writing a book about ecology. It’s for University of Chicago Press. The working title is “Ecology At Work”, though that’s only one of several candidate titles. Other candidate titles include “Ecology Master Class”, “Re-engineering Ecology”, and the joke titles that I and others tweeted recently.

Anyway, I’m very excited by this new challenge I’ve set myself, and also very nervous that I can pull it off. Which is where you come in. Below the fold is a draft introduction to my book. Please tear it apart.

Ok, don’t just tear it apart; any and all feedback is most welcome. But critical feedback and suggestions for improvement are particularly welcome. If you think the style sucks, or that the book sounds boring, or whatever, you are not doing me any favors unless you tell me that!

Feel free as well to ask me questions about the book, suggest things I should read, etc.

I’ll of course be getting feedback from more traditional sources as well. But every little helps.

Since many readers prefer not to comment, at the end there’s a little poll for you to tell me what you thought.

UPDATE: The comments have already given me some good feedback: it’s not as clear as it should be up front what the book is about and who the target audience is. And for some readers it’s still not totally clear even by the end. So: the book will comprise comparative case studies of what works and what doesn’t in ecological research. It’s not an introductory ecology textbook, it’s not a methods handbook, and it’s not an “ecology grad student skills” manual like How To Do Ecology. If you think of it as “kind of like A Critique For Ecology, but with lots of positive bits to go along with the critical bits and without a single narrow prescription for how to do ecology properly”, you won’t be too far off. The target audience is ecologists and ecology grad students interested in fundamental research.

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Do ecologists do enough research to resolve apparent contradictions? (UPDATED)

A while back, a correspondent noted that many important advances in physics arose from apparent contradictions between established bodies of knowledge. If you’re confident that X and Y are both true, but X and Y appear to contradict one another, well, that’s a puzzle that demands resolution. And the resolution often is a deep insight into X, Y, and/or the relationship between them. My correspondent suggested that this isn’t unique to physics, that identifying and resolving apparent contradictions is a good way to advance any scientific field.

I think there’s something to this. I’m currently revising a paper I’m very proud of (we’ll see what the reviewers think!) The genesis of the paper was me recognizing what seemed like a contradiction between two things I thought I knew about metapopulation dynamics. Resolving that contradiction led me to what I think is a deep insight about how metapopulations persist.

My correspondent suggested that ecologists do relatively little research based on resolving apparent contradictions. I think that’s right, though I don’t have any data.

Assuming for the sake of argument that’s right, why is that? Is it because ecologists’ ideas about the world all are mutually compatible? And if ecologists’ ideas about the world are all mutually compatible, is that to ecology’s credit or discredit? If ecologists are unable to do contradiction-resolving research because their field seems not to contain many incompatible claims, well, maybe that’s a sign that ecology’s claims are too vague?

What do you think?

UPDATE: Our commenters always come through. See the very first comment for two excellent examples of apparent contractions in ecology and evolution–Reid’s paradox and the paradox of stasis. Also see the comments for discussion of why the paradox of the plankton and the paradox of enrichment aren’t really “paradoxes” in the sense I intended in the post.

Stylized facts in ecology

In economics and other social sciences, “stylized facts” are broad empirical generalizations that are essentially true, although they may be inaccurate in some details, gloss over some nuances, or have some exceptions. The term was coined by Kaldor (1961), who identified several stylized facts about macroeconomics; they’re now known as the “Kaldor facts”.

Stylized facts are widely seen as a key raw material for healthy social scientific research (Summers 1991, Abad & Khalifa 2015). Stylized facts give theory a target to shoot at–something to explain. Indeed, the most useful ones will suggest (though of course not prove) theoretical hypotheses that might explain them. Stylized facts allow you to evaluate theory: your theory is importantly wrong if it can’t reproduce all the stylized facts it should reproduce. Stylized facts guide theory improvement: knowing which stylized facts your theory does and doesn’t reproduce suggests ideas for how to improve your theory. Finally, stylized facts aid feedback from theory to empirical work. Theory that predicts new stylized facts for empiricists to look for is highly valued. Theory that’s hard to test because it doesn’t predict any new stylized facts is much harder to test and so much less valued. Summers (1991) basically argues that if empiricists aren’t producing stylized facts, and theorists aren’t explaining and predicting stylized facts, they’re both Doing It Wrong.

I wouldn’t go that far. But I do think Summers and the many economists who think as he does have a point from which ecology could draw some lessons.

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Book review: The Theory of Ecological Communities by Mark Vellend

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Earlier this fall I read Mark Vellend’s The Theory of Ecological Communities. I read it on my own, and also read it in a reading group with several ecology grad students. Here’s my review.*

tl;dr: It’s a very good book that fills a real pedagogical need. Whether it will also shape the direction of future research in community ecology is an open question, I think. Below the fold you’ll find me engaging with the book, which I think and hope Mark will welcome.

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Is fundamental research a young ecologist’s game?

Anecdotal observation: ecologists tend to switch from fundamental to applied research as they age. Marc Cadotte used to ask fundamental questions in protist microcosms; now he’s the editor of an applied journal who blogs about the importance of “ecosystem health”. Dave Tilman started out developing resource competition theory and testing it with algae in chemostats; these days he writes a lot about sustainable agriculture. Will Wilson used to do stuff like model Lotka-Volterra species-abundance distributions; now he’s writing a book on stormwater science. Brian started out working on how to test neutral theory, but these days he thinks a lot about how to do policy-relevant science. Meg once said that she was most interested in basic research questions, and she still is, but lately she’s been devoting increasing amounts of time to public education and outreach. Many more examples could be given.

Obviously, many junior people do applied work. Many senior people do fundamental work. And many people do a mix of both. But when somebody switches from doing one to the other, or changes the mix of work they do, it seems like it’s almost always in the direction of more applied work and less fundamental work. I can’t think of anyone who’s gone in the other direction in a big way.

Why is that?

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More faculty hiring practices from economics that ecologists might (not) want to consider

Following up on my recent post noting that in some social science fields, including economics, faculty hiring places heavy (though far from exclusive) weight on one “job market” paper, here are some other aspects of how faculty hiring works in economics. Tweets from @LauraEllenDee were part of my inspiration, and comments on that previous post were a big help too (have I mentioned lately how much I love our commenters?)

I find it interesting to think about which if any of these formal and informal practices could or should be adopted in ecology and other scientific fields (even though I think current practices in ecology are mostly reasonable). Learning about how things work in other fields stops you from taking things for granted* and helps you imagine how things could work in your own field. It also gives you a more realistic sense of what any reforms in your own field might achieve. Learning about how things work in other fields both helps you dream and keeps you grounded.

One challenge in thinking about this is that to some extent these alternative clusters of practices may be “package deals”. You can’t always pick and choose, at least not very easily, because any one practice might well be undesirable or unworkable in isolation from other practices.

So here are some other hiring practices in economics (follow that link for the post from which I’ve gotten much of my information. See also.) This is obviously a broad-brush picture and I’m sure I haven’t gotten all the details right; comments welcome. If all you know about is hiring practices in ecology, get ready to enter the Twilight Zone. A world like ours in many respects, but weirdly different in others… 🙂

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So, did you know that in some fields faculty are hired based on ONE paper?

If you didn’t know, in economics and political science, people are hired for faculty positions based in large part on their “job market paper”. As in, one paper, ordinarily from their Ph.D. work and often not even published yet. Number of publications matters relatively little (though apparently it matters more in political science than in economics). Economics even has a centralized repository of job market papers; that’s how much they matter.

I am curious to hear what you think of this, and whether you think this approach or something like it could be an improvement on current practices in ecology. Personally, I think current faculty hiring practices in ecology are mostly pretty reasonable (see also), and so don’t think this would be a net improvement on current practices in ecology. But I think it’s not so obviously a bad idea as to be uninteresting to think about. I find it useful to think about the practices of other fields and whether they’d transfer to ecology. It helps me look at standard practice in ecology with fresh eyes. A few thoughts to get the ball rolling:

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