Who pays the publication fees for your papers, when there is a fee? What if it’s a collaboration?

Who pays the publication fee for your papers, when there is one?

When the authors are all members of the same lab, I assume the PI ordinarily pays the fee if there is one. That’s certainly what I do.

Just recently I published an author-pays open access paper with a grad student whom I co-supervised with a colleague, and there’s a second such paper in the works. I had been hoping to split the publication fees with my colleague. But it may come down to whoever has the most grant money.

What about papers by working groups or other big collaborations? Who pays the publication fee then? Does whatever funding source paid for the working group also pay the publication fee? Or does some working group member pay the fee from one of their grants, or from some other source available to them such as an institutional open access fund? What if more than one person in the working group has the ability to pay? In that case I guess the first author, or the first author’s PI, would pay?

Same questions for the data hosting fees charged by some depositories, when depositing data associated with a publication.

ht to a correspondent for suggesting this post idea.

Should ecology papers have guarantors who take full responsibility for a paper?

What does it mean for someone to be corresponding author on a paper? Does it mean they are taking full responsibility for the project, or does it simply mean that they uploaded the files to Manuscript Central? The answer to this question is important because authorship carries with it not only credit for a paper, but responsibility for it as well. At present, there is variation in what ecologists think is conveyed by corresponding authorship (more on this below). In working on a manuscript related to last and corresponding authorship practices in ecology, I have come across the idea of having guarantors of a manuscript — that is, one or more authors of the paper who are willing and able to vouch for the integrity of the project as a whole. This idea has been suggested repeatedly over the years (Rennie et al. 1997, Cozzarelli 2004, Weltzin et al. 2006) but has not been widely adopted. My goal with this post is to explore the idea of manuscript guarantors for papers in ecology, since this is the main point I’m stuck on with this manuscript.

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I just got my first papers accepted in almost two years. Which is ok. (UPDATED)

If you look at my publications list, you’ll see that it doesn’t look up to date. The most recent paper on it came out in 2015. And it’s true that it’s not up to date–but only because I’m a co-author on a couple of papers that got accepted in the past week.

Which means that in terms of publishing papers, I went 0-for-2016. I went almost two years between acceptance letters.

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Why I don’t sign (most of) my reviews

A few months ago, Stephen Heard wrote a blog post that prompted us to have a brief twitter discussion on whether we sign our reviews. Steve tends to sign his reviews, and I tend not to, but neither of us felt completely sure that our approach was the right one. So, we decided that it would be fun for us to both write posts about our views on signing (or not signing) reviews. In the interim, I accepted a review request where I decided, before opening the paper, that I would sign the review to see whether that changed how I did the review. So, in this post I will discuss why I have generally not signed my name to reviews, how it felt to do a review where I signed my name, and what I plan on doing in the future.

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Poll: should all reviewers be satisfied before a paper is accepted for publication?

I was very surprised by the results of Meg’s recent poll on what reviewers mean when they say that, yes, they’d be willing to review a revised version of an ms. 34% mean not merely that they’re willing to review a revised version, but that they want to see a revised version to make sure the authors have addressed their concerns. Like Meg, I had no idea that reviewers who feel that way are such a large minority!

Which got me thinking about the roles of reviewers and editors, and if my own view on their roles isn’t as universal as I had (naively?) assumed. So below is a one-question poll. Do you see reviewers as advisers to the editor? Or do you think editors should ordinarily defer to reviewers, so that all reviewers should be satisfied before a paper is accepted for publication?

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Michael Rosenzweig: an appreciation

I am currently attending a Festschrift this week for Michael Rosenzweig. Make no mistake, he is still actively doing science, but with 50+ years of scientific career, it seems like a good time to reflect on what an impressive career he has had. Just for full disclosure upfront, he was my PhD adviser, so I’m hardly the most unbiased reporter, but of course that gives me a close perspective.

Mike was awarded the Ecological Society of America’s Eminent Ecologist award in 2008 and he has well over 100 papers, many massively cited, and three books, so I imagine many are familiar with his published work, and it would take too much space to summarize it anyway. I want to offer several more reflective and in some cases more personal thoughts. Take them as a reflection of my respect and appreciation for Mike or my musings on the ingredients of a good scientific career as you wish.

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Changes in number of authors and position of corresponding author in Ecology papers

Based on my interest in authorship practices in ecology, I decided to look at papers published in Ecology in each of the past seven decades to see how corresponding authorship changed over that time.* I looked at the first (or second**) issue of Ecology in 1956 and every ten years thereafter.

tl:dr version of the results: Not surprisingly, the number of authors increased over time. For corresponding authorship, I found that, in 1996 and earlier, the corresponding author was almost never indicated. Looking every 5 years from 2001-2016, the first author*** was usually the corresponding author, though expanding the analysis to include AmNat and Evolution**** suggests that some of the changes might be due to some of the more mundane aspects of publication.

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Poll: Have you been involved in a “professors on parade” course? Was it useful?

Recently, my department has been discussing whether to (re)create a course for first year grad students that would be a “professors on parade” sort of course – that is, a course where a different faculty member leads the course each week. This proposal is in response to new grad students saying they’d like more opportunities to get to know faculty early in their grad careers. Depending on the format of the course, it could also help with another request from students: more training in basic academic skills (e.g., how to give a talk, how to make a poster, etc.)

One thing this discussion has left me wondering is how other departments do this, and how well it works in those departments.* So, today, I’m doing a survey related to how this works other places. I will follow up tomorrow with a post for my idea for a different twist on this sort of course – which I think is exciting but also perhaps doomed to fail. (edit: here’s the link to the follow up post)

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Mentoring plans: a really useful tool for PIs and their lab members

Over the years, I’ve heard people talk about mentoring plans and individual development plans (IDPs), and always thought they sounded like they could be worth trying some time. But I never made it a high priority, and so never actually got to doing them with my lab. I got as far as starting to do an IDP for myself to test it out, but never got further than that. Then, last year, I had to do a mentoring plan with one of my students, as a requirement of her graduate program. As soon as I did that one with her, I realized I needed to be doing these with everyone in my lab, including grad students, postdocs, technicians, and undergrads. Here, I’ll describe what we include in our mentoring plans, talk about some of the ways they’ve been helpful, and will ask for ideas on some things I’d like to add or change.

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On finding errors in one’s published analyses

Dan Bolnick just had a really important – and, yes, brave – post on finding an error in a published study of his that has led him to retract that study. (The retraction isn’t official yet.) In his post, he does a great job of explaining how the mistake happened (a coding error in R), how he found it (someone tried to recreate his analysis and was unsuccessful), what it means for the analysis (what he thought was a weak trend is actually a nonexistent trend), and what he learned from it (among others, that it’s important to own up to one’s failures, and there are risks in using custom code to analyze data).

This is a topic I’ve thought about a lot, largely because I had to correct a paper. It was the most stressful episode of my academic career. During that period, my anxiety was as high as it has ever been. A few people have suggested I should write a blog post about it in the past, but it still felt too raw – just thinking about it was enough to cause an anxiety surge. So, I was a little surprised when my first reaction to reading Dan’s post was that maybe now is the time to write about my similar experience. When Brian wrote a post last year on corrections and retractions in ecology (noting that mistakes will inevitably happen because science is done by humans and humans make mistakes), I still felt like I couldn’t write about it. But now I think I can. Dan and Brian are correct that it’s important to own up to our failures, even though it’s hard. Even though correcting the record is exactly how science is supposed to work (and I did corrected the paper as soon as I discovered the error), it still is something that is very hard for me to talk about.

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