Friday links: an admirable retraction in ecology, AI vs. mathematics, and more

Also this week: the latest on a major case of serial scientific misconduct in botany, “you cannot be serious,” and more.

From Jeremy:

Theoretical ecologist Priyanga Amarasekare has set up a public website, where she details her responses to UCLA’s latest charges against her. Yes, these latest charges are on top of all the severe sanctions to which she’s already been subjected. That’s perhaps the most dismaying part for me. Not only have the sanctions against her have not only been much more severe than recommended by the departmental committee that investigated the original charges, but UCLA is still finding reasons to continue imposing additional severe sanctions. Also, a reminder of the GoFundMe that Sally Otto set up to help Priyanga support her family and cover her legal expenses. Note that I pass this news on because it is likely to be of interest to some of you, not for purposes of inviting commentary. Previous comment threads on this case, here and elsewhere, have (i) expressed a wide range of views, and (ii) quickly devolved into shouting matches, or threatened to do so. I suspect that most people interested in this case have already heard the full range of views and come to their own opinions (justified or otherwise). I don’t think further discussion here wouldn’t add much value for anyone, and this blog is not going to play host to a shouting match. Comments remain open on this post for purposes of commenting on the other links.

Many of you will recall that, a couple of years ago, whistleblower Ken Thompson and the investigative journalists at Science uncovered serious, repeated data fabrication by Steven Newmaster, a prominent botany prof at Guelph University here in Canada. Guelph “investigated,” by which I mean “cleared Newmaster of misconduct without actually doing any substantial investigation, in the hopes that everyone would forget about the whole thing.” Nice try, Guelph. Ken Thompson and seven other accusers (including several profs from Newmaster’s own department) appealed to the Canadian federal agency responsible for research misconduct. This week, Science reports that the accusers won their appeal. The feds found that the initial investigation was inadequate and ordered Guelph to do it again. The new investigation just found Newmaster guilty of data fabrication in three papers. Guelph remains mum on what sanctions Newmaster will face, if any. But come on–they’ve got to fire him now, surely? I mean, Newmaster’s surely not going to be able to bring in big grants anymore (right?) So even if Guelph were totally unprincipled, what would they gain by retaining him? Anyway, whatever happens to Newmaster, kudos to Ken Thompson and the other accusers for seeing this through. I’m just sorry they had to.

Relatedly: Stuart Buck argues that the swiftness with which scientific misconduct is investigated, and the severity of the sanctions, tends to vary with the nature of the misconduct. At least, with respect to federally funded biomedical research in the US. Spend your grant money on, say, strip clubs? Expect to be fired quickly, and then sent to prison. Spend your grant money on fake research? Expect to keep your job for years (at least), and not be sent to prison. I presume that’s because even the most clear-cut cases of data and image fabrication aren’t as clear-cut as spending grant money on, say, strip clubs? There are various ways to try to explain away deliberate data and image fabrication, and refuting them generally requires at least a bit of expertise. But there’s really no explaining away spending your grant money at a strip club.

Adam Mastroianni channels his inner John McEnroe and argues that you can be serious. Meaning “actually caring about stuff, and for the right reasons.” Great piece. Sample quote, to encourage you to click through:

Before that, I believed what everybody else seems to believe: if you play the game well enough and long enough, eventually you get to stop playing and go do whatever you want. I played the game pretty well for a long time, and now it’s obvious to me that the reward for playing the game is more game. You just keep unlocking levels forever, and the levels don’t even get more interesting (“Ooh, this one is in space!”). It’s just the same thing over and over until you die. You don’t get out by winning; you get out by stopping.

Fields Medalist Terence Tao on how AI will change mathematics research and education. Very interesting.

Questions and answers about applied statistics and multilevel modeling. From statistician Andrew Gelman’s students and Gelman himself.

New satirical campus novel dropped a few months ago, but I only just heard about it. Here’s a review in the Guardian. I’m a huge fan of Small World, and a moderately-sized fan of Moo, so this one’s going on my reading list.

No one is coming to save Canadian higher education over the next decade. The universities are going to have to save themselves, by cutting costs.

Heilmayr et al. (2023 Science) studied the drought sensitivity of mesic forests faced with climate change. The paper was just retracted due to calculation errors. Retraction notice here, Retraction Watch story here. TL;DR: another research group found errors in the R script after the paper was published. Fixing the errors changed the results of some of the robustness checks, and so the authors retracted. Kudos to all involved for doing the right thing and doing it promptly. Mistakes happen in science. People should be praised for correcting them, rather than blamed for committing them in the first place.

9 thoughts on “Friday links: an admirable retraction in ecology, AI vs. mathematics, and more

  1. With Steven Newmaster, after ‘the Dubious Botanist’ podcast from Canadaland a couple years ago, I was shaking my head how a university could look the other way. Looking away stains the entire institution. I think institutions are just inherently reflexive and prefer going after whistleblowers than one of their own. Another example caught my eye this morning. RW posted a link to the obituary for Ned Feder:

    “Scientist and activist for integrity in science and medicine” Ned Feder “

    “In 1986, Dr. Feder and a colleague, Walter Stewart, became interested in and began to study the issue of professional misconduct among scientists, and found significant deviations from ethical standards in many cases. Their published papers were controversial …. In 1993, senior officials at NIH directed Dr. Feder and his colleague to stop their ongoing studies on misconduct, and they were reassigned to administrative positions.” No misfortune ever comes to those nameless senior official types, whether at NIH, Guelph, or wherever.

    • Interesting story about Ned Feder and Walter Stewart, I’d never heard of them, thanks for sharing.

      “No misfortune ever comes to those nameless senior official types, whether at NIH, Guelph, or wherever.”

      Yup. As far as I know, no named senior university or government official has ever been sanctioned for mishandling or slow-walking a professional misconduct case. I mean, maaaybe it’s happened and I just don’t know about it. But it’s super-rare at best.

  2. It strikes me as a chunk of this week (and related repirts in the past) can be summarized as part of a recurring theme: kudos to non-frauding individuals (genuine mistakes, coauthored w a fraudster) and boos for institutions (universities & most but not all journals). I’m glad to hear individual ethics are holding, up but what is wrong with our institutions?

    • Hmm. Lately I’ve been struck by the variation among institutions. Toronto and UC-Davis did the right things regarding Denon Start, for instance, and did them quickly. Delaware did the right thing regarding Danielle Dixson, and did it pretty quickly. Somewhere in the middle is McMaster, which did the right thing about Jonathan Pruitt in the end, but took frickin’ forever. On the other end of the scale is UCLA continuing to go after Priyanga, and Guelph having to be forced by the Canadian federal government to do something about Steven Newmaster.

    • I hadn’t heard of Dear Committee Members. I will check that out.

      Re: satirical campus novels, Lucky Jim is the classic of the genre. Perhaps a bit dated now?

      David Lodge is the contemporary king of campus satires, though they’re humanities rather than science focused. Besides Small World (the best of them), there’s Changing Places, Nice Work, and Thinks… There’s also Deaf Sentence, but that was pretty weak, don’t bother with it.

    • From Pruitt’s personal author website: https://www.theshadowsofthemonolith.com/the-author/

      Famed especially for his studies of the social behaviour of arachnids, Pruitt was dubbed ‘Spiderman’ and, like the fictional superhero, had the innate talent and ability to scale to great heights.

      However, the trajectory of Pruitt’s journey took an unexpected turn with the emergence of a scientific scandal which echoed loudly within the cloisters of the academic community. Yet amidst the tumult, Pruitt maintained that the data anomalies detected constituted a small percentage of the data examined and with few exceptions failed to change a study’s findings. The reader is free to form their own conclusions but, as Pruitt remarked, “Why would I deliberately manipulate data if not for a favourable gain? And do so in such a ham-fisted manner that I was bound to get caught? It doesn’t make a ton of sense.”

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